Mapped reads for uncultivated Pasteurellaceae bacterium UBA11380 geno... - SRA

SRX3578060: Mapped reads for uncultivated Pasteurellaceae bacterium UBA11380 genome recovered from SRX216765
1 ILLUMINA (Illumina HiSeq 2000) run: 154,695 spots, 29.9M bases, 15.2Mb downloads

Design: Reads from SRX216765 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA11380 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

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Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Pasteurellaceae bacterium UBA11380 genome recovered from SRX216765

SAMN08019056 • SRS2847789 • All experiments • All runs

Organism: Pasteurellaceae bacterium

Library:

Name: UBA11380_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 154,695 spots, 29.9M bases, 15.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR6488225	154,695	29.9M	15.2Mb	2018-02-23

ID:: 4963562

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Sequence Read Archive

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